deepseek-harness/docs/graph-atlas.md

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     Run `pnpm run gen-doc-graphs` to regenerate. -->

# Documentation Graph Index

These diagrams are the relationship layer above the generated catalogs. Use them to navigate package topology, capability seams, event flow, model-facing tools, app composition, and runtime lifecycle paths. Exact signatures and type shapes still live in the [subsystem pages](subsystems/core.md) (types + the generated `cordis-surface` regions) and [tool-catalog.md](tool-catalog.md).

The process decision behind this index is recorded in [the documentation graph Agent Note](../.agents/notes/archived/process/2026-07-03-documentation-graph-atlas.md).

| Graph | Mode |
| --- | --- |
| [module dependency graph](module-graph.md) | `generated` |
| [tool schema catalog and package map](tool-catalog.md) | `generated` |
| [capability seams and core services](capability-seams.md) | `hybrid generated` |
| [dsh shared base composition](../apps/cli/composition.md) | `hybrid generated` |
| [headless-agent app composition](../examples/headless-agent/composition.md) | `hybrid generated` |
| [acp-agent app composition](../examples/acp-agent/composition.md) | `hybrid generated` |
| [event producer/consumer matrix](event-producer-consumer.md) | `hybrid generated` |
| [agent turn and step lifecycle](agent-lifecycle.md) | `curated` |
| [tool execution pipeline](tool-execution-pipeline.md) | `curated` |

Regenerate with `pnpm run gen-doc-graphs`; verify freshness with `pnpm run verify-doc-graphs`.

Maintenance mode: mixed: each linked page declares generated, hybrid, or curated mode.