docs: fix reference sidebar ordering and group the subsystem pages
The VitePress config declared no position for the subsystem or other-interface sections, so `indexOf` returned -1 and sorted them ahead of every declared group: the reference landing page's own sidebar entry sat 1549px below the fold. Four subsystem pages also shared `order` values with pages in the same section, resolved only by sort stability and array concatenation order. Section placement and collapse move into the manifest as a per-locale declaration, and `sectionSpec` throws for an undeclared section instead of sorting it silently to the top. Subsystem pages are grouped by concern, the six topical groups collapse until one holds the page being read, and page order derives from array position. The projector drops the language-switcher line and repository badge the canonical pages carry for their GitHub readers. The navigation bar gains the DeepSeek wordmark, a release-stage tag, and a favicon; the sidebar scrollbar rests invisible and appears while scrolling. Subsystem pages carry a two-level outline, and the two plugin-development tracks now cross-link.
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@@ -139,3 +139,4 @@ Function form is sufficient in most cases. Use class form when the plugin provid
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- [Build a tool](./tool.md) — learn the tool definition DSL
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- [Plugin configuration](./config.md) — accept user configuration
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- [Cordis tutorial](../../../cordis-tutorial/index.md) — the plugin framework underneath, built from a scratch directory with no API key
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