fix(persistence): reconcile project session layout

.agents/notes/implemented/bug-fix/2026-07-20-jsonl-storage-identity.md

@@ -6,11 +6,11 @@ English | [中文](2026-07-20-jsonl-storage-identity.zh.md)
 
 ## Problem
 
-JSONL lookup selects a physical log from the requested session id across cwd buckets, while the parsed `SessionHeader` supplies the metadata used by later repair and append operations. Without binding those two facts, a log selected for session A can declare session B's id or cwd and redirect a repair or later append to B's path. The bucket scan also needs a defined result when the same encoded id exists in more than one bucket. SQLite does not share this ambiguity because its primary-key query binds metadata and events to the requested id.
+JSONL lookup selects a physical log from the requested session id across project directories, while the parsed `SessionHeader` supplies the metadata used by later repair and append operations. Without binding those two facts, a log selected for session A can declare session B's id or cwd and redirect a repair or later append to B's path. The project scan also needs a defined result when the same encoded id exists in more than one project directory. SQLite does not share this ambiguity because its primary-key query binds metadata and events to the requested id.
 
 ## Decision
 
-`loadStored(id)` is the coordinator's single stored-prefix lookup. The JSONL backend scans every cwd bucket, requires at most one matching encoded filename, parses that file, then validates both `header.id === id` and `selectedPath === logPath(root, header.cwd, header.id)` before returning metadata. `list()` applies the same path validation and rejects duplicate ids across buckets.
+`loadStored(id)` is the coordinator's single stored-prefix lookup. The JSONL backend scans every project directory, requires at most one matching encoded session directory with a transcript, parses that file, then validates `header.id === id` and that the selected path either equals `logPath(root, header.cwd, header.id)` or filesystem canonicalization resolves both spellings to the same transcript. `list()` applies the same path validation and rejects duplicate ids across project directories.
 
 The coordinator independently asserts the returned id and compares the stored cwd with a live session's cwd before repair, state publication, or suffix persistence. It keeps a detached copy of validated metadata; JSONL append and repair derive their path from that copy. The `PersistenceBackend<TornMarker>` interface therefore needs neither a scope-specific live lookup nor a storage-locator type.
 
@@ -18,7 +18,7 @@ An existing configured JSONL root must be a readable directory when the plugin l
 
 ## Alternatives considered
 
-**Flatten storage by session id.** A flat namespace makes duplicate publication collide on one path, but path validation and duplicate rejection close the identity defect without changing the project-grouped cwd layout or its consumers.
+**Flatten storage by session id.** A flat namespace makes duplicate publication collide on one path, but path validation and duplicate rejection close the identity defect without making the check depend on a flat global namespace.
 
 **Carry an opaque storage locator through the coordinator.** A locator binds JSONL mutations directly to a selected path, but JSONL can reproduce that path from metadata it has already validated. Adding another generic and argument to SQLite, test backends, append, and repair makes every implementation carry a concept only the file backend needs.
 
@@ -26,4 +26,4 @@ An existing configured JSONL root must be a readable directory when the plugin l
 
 ## Consequences
 
-Mismatched, misplaced, and duplicate JSONL logs fail before repair or coordinator state mutation. The cwd-bucket format stays unchanged and needs no migration. Lookup remains proportional to the number of buckets, and one-live-writer ownership remains an explicit limitation. Coordinator and JSONL tests pin rejection before repair, unchanged bytes for both affected logs, path validation during listing, duplicate-id rejection, cwd collision handling, and load-time root validation.
+Mismatched, misplaced, and duplicate JSONL logs fail before repair or coordinator state mutation. Lookup remains proportional to the number of project directories, and one-live-writer ownership remains an explicit limitation. Coordinator and JSONL tests pin rejection before repair, unchanged bytes for both affected logs, path validation during listing, duplicate-id rejection, normalized-project collisions and case aliases, and load-time root validation.