feat: Code Mode — the registry's mode config, the SDK codegen, and the run_code bridge

The dsh-tools half of the Code Mode RFC (its fourth, final change): the
registry gains its first config — mode: native | code | both — and OWNS how
its tools reach the model. 'code' contributes exactly one wire tool,
run_code, plus a lazy tools:sdk prompt section declaring every other tool
as a generated TypeScript API (jsonSchemaToTs: total over the defineTool
subset, unknown degradation, lexicographic byte-identical rendering);
'both' ships both representations; 'native' is byte-for-byte the old
behavior. Non-native modes fail every assembly loudly without a
typescript-language ctx.codeRuntime.

run_code's dispatch bridge: JSON-normalizes each binding argument before
dispatch (what dispatches is what the tool/code-dispatch event logs — the
append can never fail on payload shape; BigInt/circulars reject that one
call), serializes all program tool calls through a per-run queue (even
Promise.all — no concurrency-safety metadata yet), routes every sub-call
through tools/pre-execute → tools/post-execute (a deny rejects the
program-side promise), drops sub-call additionalContext (no safe outlet
mid-run; pinned), owns a run-scoped abort that follows the outer signal in
and fires on settlement (in-flight sub-dispatch aborted, queued abandoned,
queue drained before returning), and converts a failed run into
CodeRunFailedError → a structured isError carrying kind + captured logs.
tool/code-dispatch joins SessionEventMap by declaration merging (log-only;
deriveMessages ignores it).

The composed surface: the tools config forwards through agent-core and
both app packages; examples/code-agent + demo:code run the worker runtime
under mode code (keyless boot smoke + a with-key e2e proving the collapsed
[run_code] header, the dispatch events, and the file the program wrote);
two new snapshot scenarios (code-mode-turn, both-mode-turn) record the SDK
section, collapsed header, dispatch events, and result card — each its own
header-pinning class (the harness gains per-scenario config overlays and
per-class pins). Catalogs, graphs, cookbook, hooks-bridge notes, and the
RFC (moved to implemented/, restructured to decision-era headings) updated
in the same change.

examples/AGENTS.md

@@ -1,6 +1,6 @@
 # AGENTS.md — Examples
 
-Runnable demos that show how the harness is wired. **Examples are NOT workspaces** — each `examples/*/package.json` is a private, dependency-free stub with no build. They are booted as unbuilt `tsx` subprocesses via the cordis Loader reading a `cordis.yml`; the `@deepseek-ai/dsh-*` plugin names in those YAML files resolve through the root `tsconfig.json` `paths` map, not through `node_modules`.
+Runnable demos showing how the harness is wired. **Examples are NOT workspaces** — each `examples/*/package.json` is a private, dependency-free stub, never built. They are booted as unbuilt `tsx` subprocesses via the cordis Loader reading a `cordis.yml`; the `@deepseek-ai/dsh-*` plugin names in those YAML files resolve through the root `tsconfig.json` `paths` map, not through `node_modules`.
 
 Because examples are not under the `packages/*/src` coverage gate, an example that grows real, reusable *logic* should extract it into a `packages/` package (where it gets the per-file 100% gate and a README). Keep only example-specific glue here: the `cordis.yml` wiring, demo-only mocks/teaching artifacts, and the e2e/snapshot scenarios. There is no `start.ts` — the boot glue (Loader tail, `.env` load, snapshot-mode selection, stdin-dispose lifecycle) lives in each app package's `bin` (`@deepseek-ai/dsh-stdio-agent`, `@deepseek-ai/dsh-acp-agent`), which the `demo:*` scripts invoke against the leaf `cordis.yml`.
 
@@ -21,6 +21,7 @@ A keyless smoke that spawns the example from a temp cwd must set `TSX_TSCONFIG_P
 |---|---|---|
 | `echo-agent` | `tests/echo.e2e.ts` — boots the real `cordis.yml`, drives the echo tool round-trip and the direct canned reply | **N/A — keyless by nature** (the `mock-echo` model has no real provider) |
 | `coding-agent` | `tests/keyless-smoke.e2e.ts` — boots the full real tree (dummy key, no prompt → no model call), asserts banner + clean exit | `tests/{full-loop,coding-task,resume,compaction,todo-write}.e2e.ts` — real model + real bash + real todo_write, world-verified |
+| `code-agent` | `tests/keyless-smoke.e2e.ts` — the Code Mode boot guard | `tests/code-mode.e2e.ts` — a real model composes two bash calls in one `run_code` program; collapsed header, dispatch events, written file all verified |
 | `acp-agent` | `pnpm run test:snapshot` — boots the real ACP subprocess and replays a recorded session keyless (incl. the hook matrix: a scenario per hook point × outcome for BOTH the Claude and Codex bridges — block, deny, ask, context-fold, force-continue); `tests/acp.e2e.ts` also asserts stdout purity without a key | `tests/acp.e2e.ts` — real ACP prompt, verifies a file the agent wrote; `tests/hooks.e2e.ts` — a real `PreToolUse` hook blocks bash, verifies the file is NOT written |
 
 See [the root AGENTS.md](../AGENTS.md) for repo-wide conventions and [docs/architecture.md](../docs/architecture.md) for the design.