feat: Code Mode — the registry's mode config, the SDK codegen, and the run_code bridge

The dsh-tools half of the Code Mode RFC (its fourth, final change): the
registry gains its first config — mode: native | code | both — and OWNS how
its tools reach the model. 'code' contributes exactly one wire tool,
run_code, plus a lazy tools:sdk prompt section declaring every other tool
as a generated TypeScript API (jsonSchemaToTs: total over the defineTool
subset, unknown degradation, lexicographic byte-identical rendering);
'both' ships both representations; 'native' is byte-for-byte the old
behavior. Non-native modes fail every assembly loudly without a
typescript-language ctx.codeRuntime.

run_code's dispatch bridge: JSON-normalizes each binding argument before
dispatch (what dispatches is what the tool/code-dispatch event logs — the
append can never fail on payload shape; BigInt/circulars reject that one
call), serializes all program tool calls through a per-run queue (even
Promise.all — no concurrency-safety metadata yet), routes every sub-call
through tools/pre-execute → tools/post-execute (a deny rejects the
program-side promise), drops sub-call additionalContext (no safe outlet
mid-run; pinned), owns a run-scoped abort that follows the outer signal in
and fires on settlement (in-flight sub-dispatch aborted, queued abandoned,
queue drained before returning), and converts a failed run into
CodeRunFailedError → a structured isError carrying kind + captured logs.
tool/code-dispatch joins SessionEventMap by declaration merging (log-only;
deriveMessages ignores it).

The composed surface: the tools config forwards through agent-core and
both app packages; examples/code-agent + demo:code run the worker runtime
under mode code (keyless boot smoke + a with-key e2e proving the collapsed
[run_code] header, the dispatch events, and the file the program wrote);
two new snapshot scenarios (code-mode-turn, both-mode-turn) record the SDK
section, collapsed header, dispatch events, and result card — each its own
header-pinning class (the harness gains per-scenario config overlays and
per-class pins). Catalogs, graphs, cookbook, hooks-bridge notes, and the
RFC (moved to implemented/, restructured to decision-era headings) updated
in the same change.

packages/ui/stdio-agent/src/index.ts

@@ -43,6 +43,7 @@ import ConsoleExporter from '@cordisjs/plugin-logger-console'
 import z from 'schemastery'
 import { AgentId } from '@deepseek-ai/dsh-agent'
 import { SessionId } from '@deepseek-ai/dsh-session'
+import ToolRegistry, { type Config as ToolsConfig } from '@deepseek-ai/dsh-tools'
 import * as agentCore from '@deepseek-ai/dsh-agent-core'
 import SessionPersistenceJsonl from '@deepseek-ai/dsh-session-persistence-jsonl'
 import * as uiStdio from './stdio-chat.ts'
@@ -64,6 +65,8 @@ export interface Config {
   persona?: string
   /** Explicit model-facing tool order (the system-prompt plugin's `toolOrder` config; see dsh-system-prompt). */
   toolOrder?: string[]
+  /** Tool-registry config — its presentation `mode` (forwarded through agent-core; see dsh-tools). */
+  tools?: ToolsConfig
   /** Directory the JSONL session backend writes under. Defaults to `./.sessions`. */
   persistenceRoot?: string
   /** stdin-chat banner printed once on start. Defaults to `'ready.'`. */
@@ -83,6 +86,7 @@ export const Config: z<Config> = z.object({
   // order" (the owning dsh-system-prompt schema does the same), while
   // schemastery's native [] default would read as an invalid configured list.
   toolOrder: z.array(z.string()).default(undefined as unknown as string[]),
+  tools: ToolRegistry.Config,
   persistenceRoot: z.string().default('./.sessions'),
   welcome: z.string().default('ready.'),
   resumeSessionId: z.string(),
@@ -100,6 +104,7 @@ export function apply(ctx: Context, config: Config): void {
   ctx.plugin(agentCore, {
     ...config.persona !== undefined ? { persona: config.persona } : {},
     ...config.toolOrder !== undefined ? { toolOrder: config.toolOrder } : {},
+    ...config.tools !== undefined ? { tools: config.tools } : {},
     agents: [{
       id: AgentId('main'),
       model: config.model,